Installation and configuration¶
CARTA is fundamentally a web application and utilizes a client-server architecture. There are three main components:
carta_backend
carta_frontend
carta-controller
The “carta_backend” focuses on computations of image data for visualization on the client side. Usually, the “carta_backend” is run on a powerful server or cluster with high-speed storage where users’ data reside. The “carta_frontend” receives the data from the server side and utilizes web technologies to render the data for users. The “carta_frontend” also serves as the graphical user interface (GUI) for users to interact with the CARTA application. The “carta-controller” is a crucial component in handling the lifetime of a “carta_backend” process and user login authentication. Once the three components are correctly configured, users can visit a dedicated CARTA URL and log in with credentials. Then, the GUI should be loaded and ready for use. The scenario here is called the “Site Deployment Mode”. Mostly, it is suitable for institution-wide deployment for groups of users by a system administrator.
Alternatively, the “carta_backend” and the “carta_frontend” can be run on the same computer or two different computers without the “carta-controller”. It is up to the users to execute the “carta_backend” on a computer where the image data resides and connect to it with a web browser. Traditionally, the typical use case is that a user connects to a remote server via the SSH protocol and displays applications through X11 tunneling or via VNC. The architectural design of CARTA is to avoid these less efficient ways of interacting with image data. Instead, users should use their local web browser (not a web browser in the VNC environment) to connect to the “carta_backend” running on a remote server, which is accessed via the SSH protocol. The scenario here is called the “User Deployment Mode”. It is up to the users to install CARTA on a desired computer and run it manually.
The supported operating systems of the two modes are summarized below.
Site Deployment Mode
Ubuntu Linux: 20.04 LTS (Focal Fossa), and 22.04 LTS (Jammy Jellyfish)
Red Hat Enterprise Linux / AlmaLinux / Rocky Linux: 8
User Deployment Mode
Ubuntu Linux: 20.04 LTS (Focal Fossa), and 22.04 LTS (Jammy Jellyfish)
Red Hat Enterprise Linux: 7, 8, 9
CentOS: 7
AlmaLinux/Rocky Linux: 8, 9
macOS: 11 (Big Sur), 12 (Monterey), and 13 (Ventura)
Note
CARTA may function on other Linux distributions, such as Fedora and Debian, but the CARTA development team has not tested these.
The following two sections provide the installation instructions for the two deployment modes. System administrators who wish to deploy CARTA institution-wide should refer to the section Site Deployment Mode. For general users, please refer to the section User Deployment Mode.
Site Deployment Mode¶
The Site Deployment Mode supports the following operating systems:
Ubuntu Linux: 20.04 LTS (Focal Fossa), and 22.04 LTS (Jammy Jellyfish)
Red Hat Enterprise Linux / AlmaLinux / Rocky Linux: 8
Please refer to the CARTA controller documentation to deploy CARTA at your institution as a web-based application for multiple users. Detailed instructions on installation and configuration of the “carta_backend”, the “carta_frontend”, and the “carta-controller” are provided. If there is a problem, please contact the CARTA helpdesk.
User Deployment Mode¶
The User Deployment Mode supports the following operating systems:
Ubuntu Linux: 20.04 LTS (Focal Fossa), and 22.04 LTS (Jammy Jellyfish)
Red Hat Enterprise Linux: 7, 8, 9
CentOS: 7
AlmaLinux 8, 9
Rocky Linux 8, 9
macOS: 11 (Big Sur), 12 (Monterey), and 13 (Ventura)
If you have root access and can use a package manager to install CARTA via the command line, please refer to the section Installation via package managers. Otherwise, please refer to the section Installation of the stand-alone application (direct download).
Installation via package managers¶
CARTA can be installed via the command line with package managers such as:
yum
ordnf
on Red Hat Enterprise Linux, CentOS, AlmaLinux, and Rocky Linuxapt
on Ubuntu Linuxbrew
on macOS
Please identify the operating system where you wish to run CARTA and follow the instructions. If there is a problem, please contact the CARTA helpdesk.
Ubuntu
Ubuntu 20.04 and 22.04 packages are available from our PPA. Please note that root access is required unless you install it in a Docker container.
sudo add-apt-repository ppa:cartavis-team/carta
sudo apt-get update
sudo apt install carta
Please refer to How to run CARTA? for different single-user use cases.
Note
Windows 10 or 11 users can install CARTA via the Windows Subsystem for Linux (WSL).
CentOS 7
For CentOS 7 users, the “cartavis/carta Copr” and “EPEL” repositories must be added. Please note that root access is required unless using a Docker container.
sudo yum -y install yum-plugin-copr
sudo yum -y copr enable cartavis/carta
sudo yum -y install epel-release
sudo yum -y install carta
Please refer to How to run CARTA? for different single-user use cases.
AlmaLinux 8 and 9 / Rocky Linux 8 and 9
For AlmaLinux 8 and 9 / Rocky Linux 8 and 9 users, the “cartavis/carta Copr” and “EPEL” repositories must be added. Please note that root access is required, unless using a Docker container.
sudo dnf -y install 'dnf-command(copr)'
sudo dnf -y copr enable cartavis/carta
sudo dnf -y install epel-release
sudo dnf -y install carta
Please refer to the section How to run CARTA? for different single-user use cases.
Red Hat Enterprise Linux 7
For Red Hat Enterprise Linux 7 users, the “cartavis/carta Copr” and “EPEL” repositories must be added. Please note that root access is required unless using a Docker container.
sudo bash -c 'echo -e "\
[copr:copr.fedorainfracloud.org:cartavis:carta]\n\
name=Copr repo for carta owned by cartavis\n\
baseurl=https://download.copr.fedorainfracloud.org/results/cartavis/carta/epel-7-x86_64/\n\
type=rpm-md\n\
skip_if_unavailable=True\n\
gpgcheck=1\n\
gpgkey=https://download.copr.fedorainfracloud.org/results/cartavis/carta/pubkey.gpg\n\
repo_gpgcheck=0\n\
enabled=1\n\
enabled_metadata=1" > /etc/yum.repos.d/carta.repo'
sudo rpm -ivh https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
sudo yum -y install carta
Please refer to the section How to run CARTA? for different single-user use cases.
Red Hat Enterprise Linux 8 and 9
For Red Hat Enterprise Linux 8 and 9 users, the “cartavis/carta Copr” and “EPEL” repositories must be added. Please note that root access is required unless using a Docker container.
sudo dnf -y install 'dnf-command(copr)'
sudo dnf -y copr enable cartavis/carta
sudo rpm -ivh https://dl.fedoraproject.org/pub/epel/epel-release-latest-$(rpm -E %{rhel}).noarch.rpm
sudo dnf -y install carta
Please refer to How to run CARTA? for different single-user use cases.
Note
If you have previously used our old “packages.cartavis.org” RPM repository, we recommend uninstalling all CARTA related RPMs and deleting the old repo file first, e.g.
sudo yum -y remove carta
sudo rm /etc/yum.repos.d/cartavis.repo
macOS
We officially support macOS 11 Big Sur, 12 Monterey, and 13 Ventura through Homebrew. If you do not already have it, you may install Homebrew using the following command (root access is required):
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"
Now CARTA can be installed with:
brew update
brew install --cask cartavis/tap/carta
Installation of the stand-alone application (direct download)¶
We provide alternative solutions if you do not have root access and cannot use package managers to install CARTA via the command line.
Linux AppImage
The Linux AppImage does not require root access. It can be run with:
Ubuntu Linux: 20.04 (LTS) and 22.04 (LTS)
Red Hat Enterprise Linux: 7, 8, 9
CentOS 7
AlmaLinux 8, 9
Rocky Linux 8, 9
You can simply download, extract, and run it.
We now support x86_64 and aarch64 architectures. You can download the x86_64 version via https://github.com/CARTAvis/carta/releases/download/v4.1.0/carta.AppImage.x86_64.tgz or the aarch64 version via https://github.com/CARTAvis/carta/releases/download/v4.1.0/carta.AppImage.aarch64.tgz. Alternatively, you can use the command line. For example, to get the x86_64 version:
wget https://github.com/CARTAvis/carta/releases/download/v4.1.0/carta.AppImage.x86_64.tgz
tar -xzf carta.AppImage.x86_64.tgz
Then, it will extract to carta-v4.1-x86_64.AppImage
.
Please refer to How to run CARTA? for different single-user use cases.
macOS Electron Desktop
The Intel macOS Electron Desktop version can be downloaded via https://github.com/CARTAvis/carta/releases/download/v4.1.0/CARTA-v4.1.0-x64.dmg and the native M1/M2/M3-series macOS Electron Desktop version for new Apple Silicon Macs can be downloaded via https://github.com/CARTAvis/carta/releases/download/v4.1.0/CARTA-v4.1.0-arm64.dmg.
After downloading, open the DMG installer and drag-and-drop the CARTA icon to the Applications folder.
Note
You may create an alias for starting the CARTA Electron version through your terminal. To do so, please open your “~/.zshrc” file (or “~/.bashrc” if you use bash) in a text editor and add the following line:
alias carta='/Applications/CARTA.app/Contents/MacOS/CARTA'
You may use a different alias rather than ‘carta’, e.g. ‘carta-v4.1’ or ‘carta-electron’.
Please refer to How to run CARTA? for different single-user use cases.
How to run CARTA?¶
There are different ways of running CARTA in your working environment. Please identify the following use cases and follow the instructions accordingly.
CARTA is installed in the “Site Deployment Mode” by my system administrator at my institute: Site Deployment Mode: connecting CARTA.
CARTA is installed in the “User Deployment Mode”, and I would like to run CARTA on a remote server: User Deployment Mode: running CARTA on a remote server
CARTA is installed in the “User Deployment Mode”, and I would like to run CARTA on a local computer: User Deployment Mode: running CARTA on a local computer
Please note that the CARTA GUI is run in the web browser environment. The supported browsers are:
Google Chrome (tested with v116)
Firefox (tested with v117)
Safari (tested with v16.5)
While other browsers may be functional, we cannot guarantee their compatibility as they have not been tested.
Note
CARTA requires WebGL2 for proper image rendering. Verify browser compatibility at https://webglreport.com/?v=2.
Site Deployment Mode: connecting CARTA¶
If your institute has CARTA deployed for multiple users, you should have a dedicated URL to access CARTA (please check with your system administrator). You need to access the URL with your web browser (e.g., Google Chrome, Firefox, or Safari) and will see a dashboard similar to the following screenshot:
Note
When you are already authorized, you may not see the login page when you access the CARTA URL. Instead, the CARTA Graphical User Interface (GUI) should appear and be ready for use.
Once you enter your login information, the CARTA Graphical User Interface (GUI) will appear and be readily available for use.
When CARTA is deployed in the “Site Deployment Mode”, a “Server” option is available in the “File” menu. With the “Server” menu, you can restart the “carta_backend” process, log out of the CARTA service, visit the dashboard for more options, and copy the session ID or URL to the clipboard.
The dashboard appears like the screenshot below. You can request a new CARTA session as a new browser tab. However, note that this new session shares the same “carta_backend” process as existing sessions.
For debugging purposes, you can access the program log through the dashboard.
User Deployment Mode: running CARTA on a remote server¶
After you have successfully installed CARTA on a remote server via a package manager or by downloading the AppImage, you can try the following example to launch CARTA with the command line:
# CARTA installed via a package manager (yum, dnf, or apt)
carta --no_browser
# CARTA installed by downloading the AppImage
./carta-v4.1-x86_64.AppImage --no_browser
Please ensure that you have the --no_browser
flag set. Then you should see something like the following in your terminal:
[2021-06-03 10:30:57.536] [info] Writing to the log file: /home/spongebob/.carta/log/carta.log
[2021-06-03 10:30:57.537] [info] /usr/bin/carta_backend: Version 4.1.0
[2021-06-03 10:30:57.574] [info] Serving CARTA frontend from /usr/share/carta/frontend
[2021-06-03 10:30:57.575] [info] Listening on port 3002 with top level folder /, starting folder /home/spongebob. The number of OpenMP worker threads will be handled automatically.
[2021-06-03 10:30:57.575] [info] CARTA is accessible at http://172.20.30.40:3002/?token=E1A26527-8226-4FD5-8369-2FCD00BACEE0
The last line contains the unique URL (e.g., http://172.20.30.40:3002/?token=E1A26527-8226-4FD5-8369-2FCD00BACEE0
) for you to access the CARTA process that you have just started up. You will need to copy the URL and paste it to your local web browser to initialize the CARTA GUI. Please note that “local” means the computer you are using directly in front of you. Please do not use a web browser from the remote server to prevent potential failure due to a lack of WebGL2 support.
Note
If your remote server runs a Red Hat-based distribution, a default firewall that blocks access to all ports (e.g., 3002) may be active. If so, you can establish an SSH tunnel to bypass it. To create the tunnel and start CARTA with just one line, please run the following command on your local machine:
PORT=3333 && ssh -L ${PORT}:localhost:${PORT} <user>@<server> carta --host=localhost --port=${PORT} --no_browser
In the command above, replace <user> with your username on the remote server and <server> with the DNS or IP address of the remote server. You may also need to replace carta with the exact command you usually use to start CARTA on the remote server (e.g., you may use an AppImage version of CARTA).
PORT is the port number you wish to use for the connection. In this example, we use port 3333, but you may specify any available port.
After running this command, CARTA should start on the remote server, and the URL it provides should work as-is in the web browser on your local machine.
Also note that this method is intended for situations where your local machine has direct network access to the remote server (e.g., they are on the same network). It will not work if there is an intermediate gateway server. If that is the case, an SSH tunnel is still possible, but the command would be more complicated.
More CARTA initialization flags are available in the section CARTA initialization flags.
Warning
Having the --no_browser
flag set is critical when you launch CARTA on a remote server. If the flag is not set, CARTA will launch the default web browser on the remote server. If you have enabled X11 tunneling when you access the remote server via the SSH protocol, the web browser will be displayed on your local computer via X11. Otherwise, you will not see any browser displayed on your screen. Even if the web browser from the remote server is displayed successfully with CARTA initialized, we do not recommend using CARTA in this way because the rendering is much less efficient, and your image may not be rendered correctly due to a lack of WebGL2 support.
If you would like to initialize CARTA with an image loaded in the Image Viewer or a folder loaded in the File Browser, please try:
# CARTA installed via a package manager (yum, dnf, or apt)
carta M51.fits --no_browser
carta /alma/data --no_browser
# CARTA installed by downloading the AppImage
./carta-v4.1-x86_64.AppImage M51.fits --no_browser
./carta-v4.1-x86_64.AppImage /alma/data --no_browser
User Deployment Mode: running CARTA on a local computer¶
After you have successfully installed CARTA on your local computer via a package manager or by downloading the AppImage, you can try the following example to initialize CARTA with the command line:
# CARTA installed via a package manager (yum, dnf, apt, or brew)
carta
# CARTA installed by downloading the AppImage
./carta-v4.1-x86_64.AppImage
Then you should see something like the following in your terminal and the CARTA GUI initializing in your default web browser:
[2021-06-03 11:03:41.279] [info] Writing to the log file: /Users/spongebob/.carta/log/carta.log
[2021-06-03 11:03:41.280] [info] /usr/local/bin/carta_backend: Version 4.1.0
[2021-06-03 11:03:41.289] [info] Serving CARTA frontend from /usr/local/Cellar/carta/4.1.0/share/carta/frontend
[2021-06-03 11:03:41.289] [info] Listening on port 3002 with top level folder /, starting folder /Users/spongebob. The number of OpenMP worker threads will be handled automatically.
[2021-06-03 11:03:41.446] [info] CARTA is accessible at http://192.168.0.128:3002/?token=C71D128D-3567-4EA1-B0F2-E703D63D8D0F
[2021-06-03 11:03:45.209] [info] Session 1 [192.168.0.128] Connected. Num sessions: 1
Your default web browser is launched automatically to access the URL on the second last line. If you want to turn this automation off, please add the --no_browser
flag when you launch CARTA with the command line. If you want this web browser automation with more control over browser type or properties, please refer to the section Browser options. More CARTA initialization flags are available in the section CARTA initialization flags.
Note
If you wish to run the AppImage inside a Docker container, or your system has FUSE disabled, please prefix with the following environment variable:
APPIMAGE_EXTRACT_AND_RUN=1 ./carta-v4.1-x86_64.AppImage
If you would like to initialize CARTA with an image loaded in the Image Viewer or a folder loaded in the File Browser, please try:
# CARTA installed via a package manager (yum, apt, or brew)
carta M51.fits --no_browser
carta /alma/data --no_browser
# CARTA installed by downloading the AppImage
./carta-v4.1-x86_64.AppImage M51.fits --no_browser
./carta-v4.1-x86_64.AppImage /alma/data --no_browser
CARTA initialization flags¶
CARTA supports a set of command-line flags for initialization. Try the following to see all the options:
# CARTA installed via a package manager (yum, dnf, apt, or brew)
carta --help
# CARTA installed by downloading the AppImage
./carta-v4.1-x86_64.AppImage --help
Then you should see:
Cube Analysis and Rendering Tool for Astronomy
Usage:
carta [OPTION...] <file or folder to open>
-h, --help print usage
-v, --version print version
--verbosity <level> display verbose logging from this level
(default: 4)
--no_log do not log output to a log file
--log_performance enable performance debug logs
--log_protocol_messages enable protocol message debug logs
--no_frontend disable built-in HTTP frontend interface
--no_database disable built-in HTTP database interface
--no_browser don't open the frontend URL in a browser on
startup
--browser <browser> custom browser command
--host <interface> only listen on the specified interface (IP
address or hostname)
-p, --port <port> manually set the HTTP and WebSocket port
(default: 3002 or nearest available port)
-t, --omp_threads <threads> manually set OpenMP thread pool count
--top_level_folder <dir> set top-level folder for data files
--frontend_folder <dir> set folder from which frontend files are
served
--exit_timeout <sec> number of seconds to stay alive after last
session exits
--initial_timeout <sec> number of seconds to stay alive at start if
no clients connect
--idle_timeout <sec> number of seconds to keep idle sessions alive
--read_only_mode disable write requests
--enable_scripting enable HTTP scripting interface
--no_user_config ignore user configuration file
--no_system_config ignore system configuration file
--no_system_config ignore system configuration file
Deprecated and debug options:
--debug_no_auth accept all incoming WebSocket connections on
the specified port(s) (not secure; use with
caution!)
--no_runtime_config do not send a runtime config object to
frontend clients
--controller_deployment used when the backend is launched by
carta-controller
--threads <threads> [deprecated] manually set number of event
processing threads (no longer supported)
--base <dir> [deprecated] set starting folder for data
files (use the positional parameter instead)
--root <dir> [deprecated] use 'top_level_folder' instead
--no_http [deprecated] disable built-in HTTP frontend
and database interfaces (use 'no_frontend' and/or
'no_database' instead)
By default the CARTA backend uses the current directory as the starting data
folder, and uses the root of the filesystem (/) as the top-level data folder. If
a custom top-level folder is set with 'top_level_folder', the backend will be
restricted from accessing files outside this directory. Positional parameters
may be used to set a different starting directory or to open files on startup.
A built-in HTTP server is enabled by default. It serves the CARTA frontend and
provides an interface to the CARTA database. These features can be disabled with
'no_frontend' and 'no_database', for example if the CARTA backend is being
invoked by the CARTA controller, which manages access to the frontend and
database independently. The HTTP server also provides a scripting interface, but
this must be enabled explicitly with 'enable_scripting'.
Frontend files are served from '../share/carta/frontend' (relative to the location of the backend
executable). A custom frontend location may be specified with 'frontend_folder'.
By default the backend listens for HTTP and WebSocket connections on all
available interfaces, and automatically selects the first available port
starting from 3002. 'host' may be used to restrict the backend to a specific
interface. 'port' may be used to set a specific port or to provide a range of
allowed ports.
On startup the backend prints out a URL which can be used to launch the
frontend, and tries to open this URL in the default browser. It's possible to
disable this attempt completely with 'no_browser', or to provide a custom
browser command with 'browser'. 'no_browser' takes precedence. The custom
browser command may contain the placeholder CARTA_URL, which will be replaced by
the frontend URL. If the placeholder is omitted, the URL will be appended to the
end.
By default the number of OpenMP threads is automatically set to the detected
number of logical cores. A fixed number may be set with 'omp_threads'.
Logs are written both to the terminal and to a log file, '.carta/log/carta.log'
in the user's home directory. Logging to the file can be disabled with 'no_log'.
The log level is set with 'verbosity'. Possible log levels are:
0 off
1 critical
2 error
3 warning
4 info
5 debug
Performance and protocol message logging is disabled by default, but can be
enabled with 'log_performance' and 'log_protocol_messages'. 'verbosity' takes
precedence: the additional log messages will only be visible if the level is set
to 5 (debug). Performance logs are written to a separate log file,
'.carta/log/performance.log'.
The 'exit_timeout' and 'initial_timeout' options are provided to shut the
backend down automatically if it is idle (if no clients are connected).
'idle_timeout' allows the backend to kill frontend sessions that are idle (no
longer sending messages to the backend).
Enabling 'read_only_mode' prevents the backend from writing data (for example,
saving regions or generated images).
'no_user_config' and 'no_system_config' may be used to ignore the user and
global configuration files, respectively.
If you have installed the macOS Electron Desktop version and set up an alias, apart from all the abovementioned options, one additional command-line option is available for debugging purposes:
Additional Electron version flag:
--inspect Open the DevTools in the Electron window.
Browser options¶
A new option has been added to the CARTA backend executable, allowing you to specify a custom browser command for CARTA to launch the frontend automatically. This option is still under development and has certain temporary limitations. We provide some examples below to demonstrate how it can be used.
The option is provided as an arbitrary string that includes a browser executable name and any custom flags you would like to pass to the browser. The special placeholder CARTA_URL will be replaced by CARTA by the frontend URL, complete with the security token. It is only necessary to add this if there is something that you need to add after the URL – otherwise, you can leave it out, and it will be appended to the end.
This command string can be passed to the carta
executable as a command-line argument (--browser
), written permanently to a configuration file, or even used to create a custom launcher for your GUI environment. If your command contains spaces, please make sure that you quote it.
Command-line examples:
Chrome on Linux (select the correct executable name):
--browser="google-chrome --app=CARTA_URL --new-window&"
--browser="chrome --app=CARTA_URL --new-window&"
--browser="chromium-browser --app=CARTA_URL --new-window&"
Firefox on Linux:
--browser="firefox -new-tab"
--browser="firefox -new-window"
macOS:
--browser="open -a firefox"
--browser="open -a GoogleChrome"
--browser="open -n -a GoogleChrome --args --app=CARTA_URL --new-window"
Log and configuration files¶
For users who installed CARTA in the “User Deployment Mode”, a few configuration files are created in the ~/.carta
folder after you have run CARTA once. You should see that two folders are created:
config: configuration files including preferences and layouts
log: backend log named as “carta.log”
The preferences and layout files are in JSON format. The “preferences.json” file allows you to set up the preferences programmatically. A complete set of options is available in Appendix D: preferences schema. The layout folder contains all the custom layouts that you have created.
Installation of fits2idia (converting FITS to HDF5-IDIA)¶
CARTA provides a command-line tool “fits2idia” to convert a FITS image to the HDF5 (IDIA schema) format, which helps improve the user experience of image visualization and analysis, especially for large image cubes.
Installation via package managers¶
Ubuntu
The Ubuntu 20.04, and 22.04 packages are available from our PPA. Please note that root access is required unless you install it in a Docker container.
sudo add-apt-repository ppa:cartavis-team/carta
sudo apt-get update
sudo apt install fits2idia
CentOS 7
The “fits2idia” program is available from the “cartavis/carta Copr” repository and requires packages from the “EPEL” repository.
sudo yum -y install yum-plugin-copr
sudo yum -y copr enable cartavis/carta
sudo yum -y install epel-release
sudo yum -y install fits2idia
AlmaLinux 8 and 9 / Rocky Linux 8 and 9
The “fits2idia” program is available from the “cartavis/carta Copr” repository and requires packages from the “EPEL” repository.
sudo dnf -y install 'dnf-command(copr)'
sudo dnf -y copr enable cartavis/carta
sudo dnf -y install epel-release
sudo dnf -y install fits2idia
Red Hat Enterprise Linux 7
The “fits2idia” program is available from the “cartavis/carta Copr” repository and requires packages from the “EPEL” repository.
sudo bash -c 'echo -e "\
[copr:copr.fedorainfracloud.org:cartavis:carta]\n\
name=Copr repo for carta owned by cartavis\n\
baseurl=https://download.copr.fedorainfracloud.org/results/cartavis/carta/epel-7-x86_64/\n\
type=rpm-md\n\
skip_if_unavailable=True\n\
gpgcheck=1\n\
gpgkey=https://download.copr.fedorainfracloud.org/results/cartavis/carta/pubkey.gpg\n\
repo_gpgcheck=0\n\
enabled=1\n\
enabled_metadata=1" > /etc/yum.repos.d/carta.repo'
sudo rpm -ivh https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
sudo yum -y install fits2idia
Red Hat Enterprise Linux 8 and 9
The “fits2idia” program is available from the “cartavis/carta Copr” repository and requires packages from the “EPEL” repository.
sudo dnf -y install 'dnf-command(copr)'
sudo dnf -y copr enable cartavis/carta
sudo rpm -ivh https://dl.fedoraproject.org/pub/epel/epel-release-latest-$(rpm -E %{rhel}).noarch.rpm
sudo dnf -y install fits2idia
macOS
The “fits2idia” program can be installed via “homebrew” on macOS 11 (BigSur), macOS 12 (Monterey), and macOS 13 (Ventura). To install Homebrew, if not already installed:
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"
Then, “fits2idia” can be simply be installed with:
brew install cartavis/tap/fits2idia
Other installation methods¶
If you do not have “su” or “root” privilege to install “fits2idia” via package managers, you can consider the following alternatives.
Linux AppImage
For Linux users (Ubuntu/RedHat) without root access, an AppImage version of “fits2idia” may be used.
For x86_64 architectures:
wget https://github.com/CARTAvis/fits2idia/releases/download/v0.1.15/fits2idia.AppImage.x86_64.tgz
tar -xvf fits2idia.AppImage.x86_64.tgz
For aarch64 architectures:
wget https://github.com/CARTAvis/fits2idia/releases/download/v0.1.15/fits2idia.AppImage.aarch64.tgz
tar -xvf fits2idia.AppImage.aarch64.tgz
For easier access, an ‘alias’ may be set up for running it.
macOS
For macOS users who do not wish to use Homebrew, we have bundled the “fits2idia” program with the CARTA v4.1.0 Electron version for convenience. We recommend setting up an alias to use it.
Assuming you already have the CARTA v4.1.0 Electron version installed in the default location, you can create an alias to the “fit2idia” executable. In your macOS terminal, open your “~/.zshrc” file (or “~/.bashrc” if you use bash) in a text editor and add the following line:
alias fits2idia='/Applications/CARTA.app/Contents/Resources/app/carta-backend/bin/fits2idia'
Then, either source ~/.zshrc`
(or source ~/.bashrc
) or open a new tab or terminal window to use “fits2idia”.
Windows
While we do not provide official support for CARTA on Windows, you can still use it through the Windows Subsystem for Linux 2 (WSL2), with Ubuntu being the recommended Linux distribution. The following steps provide a simplified guide to installing it on Windows 11, although the method should be pretty similar for Windows 10 users:
Open the Microsoft store and search for “Ubuntu”.
Click “Get”.
It will proceed to install Ubuntu through the Windows Subsystem for Linux.
Click “Open”.
An Ubuntu terminal will appear.
An Ubuntu icon will also appear in the Start menu for easy access in future.
Install the Ubuntu version of CARTA into the terminal.
In the Ubuntu terminal type the following:
sudo add-apt-repository ppa:cartavis-team/carta(password is your Windows login password)
Press ENTER
sudo apt-get update sudo apt install cartaPress Y.
CARTA is now installed.
To run CARTA: In the Ubuntu terminal type:
carta /mnt/c/Users/<USERNAME> -–no_browserWhere <USERNAME> is your windows username.
The
--no_browser
flag suppresses it from trying to open a web-browser in Ubuntu as we strongly recommend using your local Windows web browser for best performance.CARTA will start up and will say “CARTA is accessible at” followed by a unique URL.
Copy that unique URL, and paste it into your local Windows web browser (such as Google Chrome, Firefox, or Edge).
The CARTA GUI should appear and the File Browser will open in your Windows home directory so you can easily navigate to your images.
Troubleshooting¶
In this section, we provide common issues users have experienced and solutions. If none of the solutions work, please contact CARTA Helpdesk for help.
I see images are not rendered in the image viewer.
(common) CARTA utilizes GPU-accelerated rendering techniques at the client side for image rendering. “WebGL2” support is required for Google Chrome, Firefox, and Safari web browsers. You can visit https://webglreport.com/?v=2 to see if your browser supports WebGL2. If WebGL1 (https://webglreport.com/?v=1) and WebGL2 are not supported by your browser, try one of the other ones listed above.
If you see WebGL1 is supported but not WebGL2, please check your hardware to see if there is a discrete NVIDIA GPU. If so, please check the GPU driver version. There are open-source drivers and official NVIDIA proprietary drivers. If you are using the official NVIDIA proprietary drivers and experience the issue with WebGL2, there are open-source NVIDIA drivers available for ‘Turing’ or later NVIDIA GPUs (https://github.com/NVIDIA/open-gpu-kernel-modules)) that you could try instead, or vice versa.
(common) CARTA uses GPU to render the image in the Image Viewer. If you are running CARTA remotely through a VNC window, the image may fail to render correctly, leading to a blank image. In this case, use
--no_browser
flag to launch CARTA at the remote server and use your local web browser to access the URL shown in your terminal. Please refer to the section User Deployment Mode: running CARTA on a remote server.(less common) Check your browser version. It needs to support “wasm” streaming and be enabled. More information about browser support of WebAssembly can be found at https://caniuse.com/#search=WebAssembly.
Some outdated RedHat7 distributions may have Firefox 52 ESR, which, although having WebAssembly support, is deactivated by default. We recommend updating to a newer version of Firefox “sudo yum update firefox” or installing Google Chrome. If you can not update Firefox, you can try activating WebAssembly as follows:
Open a new tab and enter
about:config
in the URL bar.A warning message will appear. Click the button to continue.
In the search box, enter
wasm
, and the list will filter down to a few results.Double-click each line related to “javascript.options.wasm” so that the “Value” column shows them as “true”.
Then close the “about:config” tab and the CARTA frontend should now load correctly.
As for the Chrome browser, WebAssembly support was introduced in Chrome version 51, but versions 51 to 56 have it deactivated by default. To activate WebAssembly in Chrome 51 to 56, enter
chrome://flags
in the URL bar, type WebAssembly in the search box that appears, and change each WebAssembly option to “Enabled”. If you have Chrome version 57 or newer, WebAssembly should be activated by default.
The RedHat7 AppImage does not open and it prints a message suggesting to extract the AppImage using the
--appimage-extract
flag.This error is due to a lack of FUSE (File System in Userspace) support. FUSE support in RedHat7 systems may be disabled in some institute environments for security reasons. If that is the case, please prefix it with the
APPIMAGE_EXTRACT_AND_RUN=1
environment variable. i.e.APPIMAGE_EXTRACT_AND_RUN=1 ./carta-v4.1-x86_64.AppImage